PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015871093.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LSD

Protein Properties

Length: 132aa MW: 13874.2 Da PI: 8.555

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015871093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.3	2.5e-13	7	30	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCr lL YPrGA++V+CalC+t XP_015871093.1 7 CNGCRSLLLYPRGATNVCCALCNT 30 ***********************8 PP
2	zf-LSD1	49.1	9.4e-16	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+t+ XP_015871093.1 46 CGGCRTLLMYTRGATSVRCSCCHTM 70 ***********************96 PP
3	zf-LSD1	50.9	2.6e-16	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C++V XP_015871093.1 84 CGNCRTMLMYPYGAPSVKCAVCHHV 108 ************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.3E-12	4	34	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.4E-11	7	30	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.8E-17	43	72	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.6E-13	46	69	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.5E-14	81	111	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-14	84	108	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MQSQLVCNGC RSLLLYPRGA TNVCCALCNT LTSVPPPGME MAQLVCGGCR TLLMYTRGAT 60 SVRCSCCHTM NLASASNQFA QVNCGNCRTM LMYPYGAPSV KCAVCHHVTN VGTGNSRVPI 120 PVHRPGGTAN SG

Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269\|PubMed:15915636}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015871093.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. Down-regulated by dark. {ECO:0000269\|PubMed:15915636}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015871093.1	1e-90	protein LSD1-like, partial
Swissprot	Q0J7V9	3e-55	LSD1_ORYSJ; Protein LSD1
TrEMBL	A0A2P5CRE2	2e-77	A0A2P5CRE2_PARAD; Multihem cytochrome
STRING	XP_008225697.1	6e-77	(Prunus mume)
STRING	EMJ13362	6e-77	(Prunus persica)
STRING	XP_007159613.1	6e-77	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4027	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	6e-58	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]