PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015871714.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 407aa    MW: 43348 Da    PI: 9.2543
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015871714.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.35.2e-132650327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C+++++tGtCk+G++CkF+H++
  XP_015871714.1 26 EPVCQYYLKTGTCKFGASCKFHHPK 50
                    789********************96 PP
2zf-CCCH36.86.6e-127196227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    ++ +C+++++tG+Ck+G +CkF+H++
  XP_015871714.1 71 GETECSYYLKTGQCKFGITCKFHHPQ 96
                    7789********************97 PP
3zf-CCCH35.32e-11228254127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++ +tG CkyG++C+++H++
  XP_015871714.1 228 PGEPECQYYIKTGDCKYGSSCRYHHPR 254
                     5799*********************96 PP
4zf-CCCH35.22.2e-11275300227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +   C f++++G+Ck+G++CkF H++
  XP_015871714.1 275 GVQVCTFYLQNGHCKFGSTCKFDHPM 300
                     5678********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.4E-72350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6762351IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-102650IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-62650IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-52850IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-56996IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.546997IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-97196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-67297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-47595IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5227254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.366227255IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-8229254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6232256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5233254IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6273300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14273301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-7275304IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-9275300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5277300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
YNHPRDRAAV AAAVRATGEY PERVGEPVCQ YYLKTGTCKF GASCKFHHPK HGGGSLSQAP  60
LNIYGYPLRP GETECSYYLK TGQCKFGITC KFHHPQPAGT SVSASAPQFY PTVQSPSVPM  120
PEQYPGASTS LRVARPPLLP GSYVQGAYGP MLFPPGVVPL HGWSPYSAPV SPVLSPGAAQ  180
PPVAATSLYG VTQLSSSSPA LARPFPSLPS SIGASSSSPK EQAFPERPGE PECQYYIKTG  240
DCKYGSSCRY HHPRDRVVPR TNCLLSPIGL PLRPGVQVCT FYLQNGHCKF GSTCKFDHPM  300
GNMRYNPSAS SLIDMPVTPY PVGNLLGTLA PSSTSSELRP ELISGSKKES YSTRMPSSAN  360
TSSSSVGLIF SQTGSVSLSE VQLSSQSSVP LSSSRSTRQG GEVRRSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015871714.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871714.10.0zinc finger CCCH domain-containing protein 32-like, partial
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLM5VMU10.0M5VMU1_PRUPE; Uncharacterized protein
STRINGXP_008235007.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein