PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872081.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 207aa    MW: 22722.2 Da    PI: 6.2688
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.6e-302181259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                    +Dg++WrKYGqKe+ gs+fprsYYrCt++   +Cp+kk+v+r ++dp ++e++Y+g+H+++
  XP_015872081.1 21 EDGFTWRKYGQKEIMGSKFPRSYYRCTHQklyQCPAKKQVQRLDDDPYTFEVIYRGNHTCH 81
                    7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-281682IPR003657WRKY domain
SuperFamilySSF1182904.32E-261882IPR003657WRKY domain
SMARTSM007741.1E-362082IPR003657WRKY domain
PfamPF031064.8E-272181IPR003657WRKY domain
PROSITE profilePS5081120.3572183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDIRIERMDA PRIGNTEIPP EDGFTWRKYG QKEIMGSKFP RSYYRCTHQK LYQCPAKKQV  60
QRLDDDPYTF EVIYRGNHTC HMSATAPSAL PPQQQPVPSE ITQGMSQLAM TTTSTTSAST  120
TAFPLGRSWL SMEFGRGGGG SSSSGAGTST GRYGKEAEDA VIDLADVMFN SGGSSSNTMD  180
FIFPSIDKWD SESGDKKDTD NANTKKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-192180968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872081.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868886.11e-153WRKY transcription factor 55-like
RefseqXP_015872081.11e-155WRKY transcription factor 55-like
TrEMBLW9RLF32e-76W9RLF3_9ROSA; WRKY transcription factor 55
STRINGXP_010103665.13e-77(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-45WRKY DNA-binding protein 55