PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015872131.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 138aa MW: 15711.8 Da PI: 9.8169

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015872131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.3	1.7e-33	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl XP_015872131.1 18 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 72 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-32	15	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.455	15	75	IPR017930	Myb domain
TIGRFAMs	TIGR01557	4.7E-25	18	73	IPR006447	Myb domain, plants
SuperFamily	SSF46689	7.17E-17	18	75	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-9	20	71	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-8	118	138	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MERNFGYENG VVMTRDPKPR LRWTADLHDR FVDAVTKLGG PDKATPKSVL RLMGLKGLTL 60 YHLKSHLQKY RLGQQARRQN PSEQTRDING GSYVQFSNNS PGTSTNSSRC DLDQAEIPIA 120 EALRCQIEVQ KRLQEQLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-21	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-21	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-21	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-21	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015872131.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578082	1e-31	JX578082.1 Gossypium hirsutum clone NBRI_GE10029 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015872131.1	1e-100	myb family transcription factor PHL11-like, partial
Refseq	XP_015901330.1	1e-100	myb family transcription factor PHL11 isoform X1
Swissprot	C0SVS4	4e-60	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2I4H7R8	4e-77	A0A2I4H7R8_JUGRE; myb family transcription factor PHL11
STRING	EOY25282	3e-75	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-54	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]