PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872336.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 333aa    MW: 37967.3 Da    PI: 8.5229
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.44.1e-162771899
                    --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    +pkkf++++g++   s   t++ +sgrsW++ l  +k  gr+++ +GW+eFv+ + +  g f+vF+++g s+f  +v +f+k
  XP_015872336.1  2 IPKKFVKKFGNE--LSAIATITIPSGRSWKLGL--QKAEGRILFVDGWQEFVEYHSIGFGYFLVFRYEGFSKF--HVCIFDK 77
                    9*****999855..888999999**********..********************************987888..*****98 PP
2B347.63e-15228313490
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     vl+++++lk+    +p +fa+++++   +s  +++e  +g++W +k++  +++ +   +++GW  F ++n+LkegD++vF+l++++++
  XP_015872336.1 228 VLLSKYNLKNYYADVPAEFATKYMQR--GSGFIKVEAFNGKKWWLKCRTlNGTASVKRISQGWAAFKNDNNLKEGDVCVFELIKQKGT 313
                     67789999999999*********744..6678***************88555665589************************986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.635178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-18278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-19285IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-15276No hitNo description
SMARTSM010192.9E-6278IPR003340B3 DNA binding domain
PfamPF023624.4E-13277IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18219311IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-18221316IPR015300DNA-binding pseudobarrel domain
CDDcd100179.19E-14224314No hitNo description
PROSITE profilePS5086312.605225323IPR003340B3 DNA binding domain
SMARTSM010197.3E-7226318IPR003340B3 DNA binding domain
PfamPF023627.1E-13228313IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
KIPKKFVKKF GNELSAIATI TIPSGRSWKL GLQKAEGRIL FVDGWQEFVE YHSIGFGYFL  60
VFRYEGFSKF HVCIFDKTAT EIDYPSNCLS RADVEPNFDK QGSEDHEEEA ADDDDYEILE  120
HQRVGNKRKK LCQRATSLKC KVARGGKNCK FEGQADQVGI GAEDISMGGK VEENEMDCPQ  180
DLPSTDEDEP MFFSRFFFCP KTKPMTKESE RAMLAARNCK RKHPSFLVLL SKYNLKNYYA  240
DVPAEFATKY MQRGSGFIKV EAFNGKKWWL KCRTLNGTAS VKRISQGWAA FKNDNNLKEG  300
DVCVFELIKQ KGTLLRASVY HAADYADPVK KHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1620732630146B3 domain-containing transcription factor VRN1
4i1k_B1e-1620732630146B3 domain-containing transcription factor VRN1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872336.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015870343.20.0B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-45B3 family protein