PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872497.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 152aa    MW: 16766.6 Da    PI: 10.7054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872497.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-184291255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr ++ +gr+v+eIr p   gk++r++lg+fg++e+Aa+a++ a+ +l+g
  XP_015872497.1 42 PFRGVRKRS-WGRYVSEIRLP---GKKTRVWLGSFGSPEMAARAYDSAAFYLKG 91
                    69****888.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.1E-207150IPR017392AP2/ERF transcription factor ERF/PTI6
PROSITE profilePS5103220.7584299IPR001471AP2/ERF domain
SMARTSM003801.8E-3342105IPR001471AP2/ERF domain
PfamPF008478.8E-124391IPR001471AP2/ERF domain
PRINTSPR003676.0E-114354IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2843100IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-1943100IPR016177DNA-binding domain
CDDcd000181.31E-2643101No hitNo description
PRINTSPR003676.0E-1181101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSITEDPAAQ FHPTKTHSQS LSKRASNSTT TTTTAARQHD TPFRGVRKRS WGRYVSEIRL  60
PGKKTRVWLG SFGSPEMAAR AYDSAAFYLK GNSASLNFPD LAESLPRPES SSRRDIQSAA  120
AKAALQPKES RSIVNSSRES VSRELTDLST EY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-154399360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-154399663ATERF1
3gcc_A3e-154399663ATERF1
5wx9_A5e-1543991572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872497.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872497.11e-107ethylene-responsive transcription factor ERF037-like, partial
SwissprotQ391273e-33TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A2I4FHD52e-51A0A2I4FHD5_JUGRE; ethylene-responsive transcription factor ERF039-like
STRINGGorai.011G113300.12e-49(Gossypium raimondii)
STRINGPOPTR_0409s00200.14e-49(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.14e-29ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]