PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872645.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 397aa    MW: 44691.2 Da    PI: 8.1978
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.31.3e-48211471128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     + pGfrF+Ptdeel+++yLkkk+eg++  + evi+e++i k+ePwdLp k+v  +e+ew+fFs+r +ky++g++++rat+ gyWkatgk+++v+s
  XP_015872645.1  21 MFPGFRFSPTDEELISYYLKKKIEGDHKCV-EVISEIEIWKHEPWDLPaKSVIRSENEWFFFSPRGRKYPNGSQSRRATELGYWKATGKERNVKS 114
                     579***********************9766.99***************666667889************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +g+k+tLvf+ grapkge+t+W+mhey +
  XP_015872645.1 115 -GSNFIGTKRTLVFHIGRAPKGERTEWIMHEYCM 147
                     .999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-5415162IPR003441NAC domain
PROSITE profilePS5100553.33721163IPR003441NAC domain
PfamPF023659.3E-2623146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDMGGGSASG EPQISIVAPT MFPGFRFSPT DEELISYYLK KKIEGDHKCV EVISEIEIWK  60
HEPWDLPAKS VIRSENEWFF FSPRGRKYPN GSQSRRATEL GYWKATGKER NVKSGSNFIG  120
TKRTLVFHIG RAPKGERTEW IMHEYCMNEK SQDSMVICRL RKNSEFRQND TTNLASSSQQ  180
QLSPRQNSNC AVSGVGIEQG DKTVEDHSKK CSSSYDSYSI EQIDSASESN QKCTTEVTQP  240
ESSGHQKDYE EDFYADILND DIIKLDESSI STTPNMFPLV ANNAEAEQKC ELPAQATPSQ  300
TTPFQGTAKR RLRLGKQAAK QGGDRRSSLE TSNNDYLIRK IGCSNSLKQS PKSISSARVT  360
VNFNLLFVVF VFMTLMVLFL SLFGGFRHVK RITNNTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-442316219164NO APICAL MERISTEM PROTEIN
1ut4_B4e-442316219164NO APICAL MERISTEM PROTEIN
1ut7_A4e-442316219164NO APICAL MERISTEM PROTEIN
1ut7_B4e-442316219164NO APICAL MERISTEM PROTEIN
3swm_A4e-442316222167NAC domain-containing protein 19
3swm_B4e-442316222167NAC domain-containing protein 19
3swm_C4e-442316222167NAC domain-containing protein 19
3swm_D4e-442316222167NAC domain-containing protein 19
3swp_A4e-442316222167NAC domain-containing protein 19
3swp_B4e-442316222167NAC domain-containing protein 19
3swp_C4e-442316222167NAC domain-containing protein 19
3swp_D4e-442316222167NAC domain-containing protein 19
4dul_A4e-442316219164NAC domain-containing protein 19
4dul_B4e-442316219164NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872645.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872645.10.0NAC domain-containing protein 40-like
SwissprotQ9XIN71e-91NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A2P5CVZ90.0A0A2P5CVZ9_TREOI; NAC domain containing protein
STRINGXP_010102025.11e-167(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.14e-91NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]