PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872679.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Whirly
Protein Properties Length: 124aa    MW: 13407.3 Da    PI: 6.78
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly114.39.1e-3618454137
          Whirly  54 sfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                     +f+lsatev++l++l++ esceffhdp++ +sn+G+vrk+l+++P+ +GsG+f+ lsv n+l+k+++++ vPv+ aefav++++
  XP_015872679.1   1 VFSLSATEVGSLISLGADESCEFFHDPSMLTSNAGQVRKSLSIKPHGNGSGYFIALSVVNNLLKSKDNLGVPVTTAEFAVMKTA 84 
                     59********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF544475.34E-381106IPR009044ssDNA-binding transcriptional regulator
Gene3DG3DSA:2.30.31.101.7E-421104IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.7E-32183IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
VFSLSATEVG SLISLGADES CEFFHDPSML TSNAGQVRKS LSIKPHGNGS GYFIALSVVN  60
NLLKSKDNLG VPVTTAEFAV MKTACSFALP HIMGWDRLTN KMPRGTEGQT SMIDRQALSL  120
EWDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A2e-53110169169StWhy2
3n1i_A2e-53110169169protein StWhy2
3n1j_A2e-53110169169Protein StWhy2
3n1k_A2e-53110169169protein StWhy2
3n1l_A2e-53110169169protein StWhy2
3r9y_A2e-53110169169Why2 protein
3r9z_A2e-53110169169Why2 protein
3ra0_A2e-53110169169Why2 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872679.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872679.11e-88single-stranded DNA-binding protein WHY2, mitochondrial, partial
SwissprotD9J0344e-55WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2I4FRC23e-64A0A2I4FRC2_JUGRE; single-stranded DNA-bindig protein WHY2, mitochondrial
STRINGXP_010035836.11e-60(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-52WHIRLY 2