PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872682.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 175aa    MW: 20362.4 Da    PI: 9.8842
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-16721501089
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     + +++   +p +f+ +++++  +s  +++e ++g++W++++++r + ++   +  GW+ F ++n+LkegD++vF+l+++++
  XP_015872682.1  72 NIERSYADVPSEFVVKYMQS--CSDFIQVEALNGKQWQMRCTFRYSINSaKRMNHGWSAFKNDNNLKEGDVCVFELIKQNG 150
                     455556789********866..8889***************99555555467999********************998543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-2058149IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1959153IPR015300DNA-binding pseudobarrel domain
CDDcd100177.08E-1862152No hitNo description
PROSITE profilePS5086311.91463161IPR003340B3 DNA binding domain
SMARTSM010192.7E-864156IPR003340B3 DNA binding domain
PfamPF023626.4E-1469149IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MRGKVKIENR THRSHDLSAK HEDEDELMFI TKSLYGSKRK PLMSRETERA FHAAKTCERT  60
HPCFLVILSK ANIERSYADV PSEFVVKYMQ SCSDFIQVEA LNGKQWQMRC TFRYSINSAK  120
RMNHGWSAFK NDNNLKEGDV CVFELIKQNG VLLRASVYHA AEYADPVKKR LKKQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-233716322145B3 domain-containing transcription factor VRN1
4i1k_B3e-233716322145B3 domain-containing transcription factor VRN1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872682.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872682.11e-131B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-24B3 family protein