PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872823.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 285aa    MW: 31160.8 Da    PI: 8.4722
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.7e-11167214455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  XP_015872823.1 167 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 214
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-17161230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.32E-9161218No hitNo description
PROSITE profilePS5088815.828163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-18163230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-8167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDPSTLINEG SLSNGNAASY NLSEIWQFPM NSGGGESGIV LGLRRGQFAQ TLAQFGDMNR  60
DVSGNDPMSL DQRENHGGGG GGGARKRRDA EEESAKGVST SNGNGNGVSN GDGKKLKISG  120
GRDENRESKT EGEANSGKPG EQNSRPHDPS KQDYIHVRAR RGQATDSHSL AERARREKIS  180
ERMKILQDLV PGCNKVIGKA LVLDEIINYI QSLQRQVEFL SMKLEAVNSR NPGIEVFTSK  240
DVSSSNMHHS LWNLFVPGIA TFHLPNKISL MLSYLRMTLM FIFEL
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872823.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3807418e-59FQ380741.1 Vitis vinifera clone SS0ACG35YM08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872823.20.0transcription factor BHLH089-like, partial
SwissprotQ0JXE77e-75BPE_ARATH; Transcription factor BPE
TrEMBLA0A2P5D2C51e-110A0A2P5D2C5_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010098235.11e-110(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.29e-68BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]