PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872898.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 169aa    MW: 18041.7 Da    PI: 9.137
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872898.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.1e-12109135127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++ +tG CkyG++C+++H++
  XP_015872898.1 109 PGEPECQYYIKTGDCKYGSSCRYHHPR 135
                     5899*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.5E-5108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.366108136IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8110135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-7113137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5114135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MPEQYPGAST SLRVARPPLL PGSYVQGAYG PMLFPPGVVP LHGWSPYSAP VSPVLSPGAA  60
QPPVAATSLY GVTQLSSSSP ALARPFPSLP SSIGASSSSP KEQAFPERPG EPECQYYIKT  120
GDCKYGSSCR YHHPRDRVVP RTNCLLSPIG LPLRPVGKII YPYLAWCSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872898.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872898.11e-116zinc finger CCCH domain-containing protein 32-like
RefseqXP_024925864.11e-113zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W915e-68C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1U8LUH91e-79A0A1U8LUH9_GOSHI; zinc finger CCCH domain-containing protein 32-like
STRINGGorai.008G009500.14e-80(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.22e-66C3H family protein