PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015873038.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

TCP

Protein Properties

Length: 269aa MW: 27341.4 Da PI: 10.391

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015873038.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.4	5.1e-38	38	124	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ + s+ +++ + + XP_015873038.1 38 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRGGGAGGVS 124 78******************************************************************9777333333333322222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.1E-32	44	120	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	44	98	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MSNSDGPSNG VTNGGGASVA EPQRQQQQQQ PPGNGALAVK KPPSKDRHSK VDGRGRRIRM 60 PIICAARVFQ LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST VSVSVRGGGA 120 GGVSASLSSS STSSASLDHK PLLGPTPFIL GKRVRPDDGV AKDGDGGDGG VSVVGPTMGS 180 MVGPATTTPG GFWAPHFGQV WSFAAAAHPD MVGQPAAVSQ QPPSLFVQQQ AIGEASAARV 240 GNYLPGHLNL LASLSGGPGS SGRRDDDPR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015873038.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015873038.1	0.0	transcription factor TCP7-like
Swissprot	Q9FMX2	2e-87	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2P5F0A8	1e-119	A0A2P5F0A8_TREOI; TCP transcription factor
STRING	XP_010096790.1	1e-115	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-57	TCP family protein