PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873053.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ZF-HD
Protein Properties Length: 258aa    MW: 28134 Da    PI: 7.1716
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.28.4e-3355110359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     ++rY+eClkNhA+ +GghavDGCgEfm++ geegt +alkCaAC+CHRnFHR+e+e+
  XP_015873053.1  55 GIRYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGTLDALKCAACNCHRNFHRKETES 110
                     689*************************9.999*********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2542110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.5E-3056108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-2957107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.59458107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.72E-20181256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-31183257IPR009057Homeodomain-like
TIGRFAMsTIGR015656.1E-24195252IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEFDEHEEQD EEMEIPIAPP GYDSLGNTAT RTTKIGGGEG EGVSSTRKSS TATTGIRYRE  60
CLKNHAVGIG GHAVDGCGEF MAAGEEGTLD ALKCAACNCH RNFHRKETES GDQSGYQLQL  120
HHHHHHHPQQ FSSYYRSPPP PSGYLHLTPA HQHHHRPLAL PAASGGGGGG GNSREEGEDV  180
SNPSSSGGGG GSGLKKRFRT KFTQEQKDNM LKFSEKLGWR IQKHDEAAVE QFCAETCVSR  240
QVLKVWMHNN KNTLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-281962531875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015873053.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873053.10.0zinc-finger homeodomain protein 2-like
SwissprotQ6YXH52e-76ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A059BKP61e-109A0A059BKP6_EUCGR; Uncharacterized protein
STRINGXP_010060080.11e-106(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-70homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]