PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873119.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 370aa    MW: 40656.8 Da    PI: 7.1678
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.91.5e-17202256256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_015873119.1 202 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 256
                     778899***********************************************98 PP
2HD-ZIP_I/II1283.9e-41202292192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  XP_015873119.1 202 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 292
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-18177259IPR009057Homeodomain-like
SuperFamilySSF466891.15E-18191259IPR009057Homeodomain-like
PROSITE profilePS5007117.216198258IPR001356Homeobox domain
SMARTSM003897.3E-16200262IPR001356Homeobox domain
PfamPF000464.9E-15202256IPR001356Homeobox domain
CDDcd000869.70E-16202259No hitNo description
PROSITE patternPS000270233256IPR017970Homeobox, conserved site
SMARTSM003409.1E-26258301IPR003106Leucine zipper, homeobox-associated
PfamPF021835.7E-11258292IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MELGLSLGEA PKPFGFLEKP RDQVINNSNN NNNKGSGFCM ALSIGPCSST GKENDQNQAA  60
DEQGKERQHQ RDDAEVENGP SVSTGSPPVQ LDLLPRTPVP RSHGFPWISS ENGCSEAGVG  120
LDVNRVPAAV VVPAAEDADE GATAVSSSPN SNSGGSSFQM DICLYNYRNN GGNNYKRDHS  180
EGEAERASSR ASDDDDANGS TRKKLRLSKE QSAFLEESFK EHNTLNPKQK LALAKQLNLR  240
PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR LHKELQELRA LKTSNPFYMQ  300
LPATTLTMCP SCERVATTTT NSTATPTPTI STTNSNANDS KPVGFPINKQ PRFYPFSHTQ  360
NHPHKSSAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206TRKKLRL
2250258RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015873119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873119.10.0homeobox-leucine zipper protein HOX11
SwissprotP466652e-94HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLW9T1Y51e-134W9T1Y5_9ROSA; Homeobox-leucine zipper protein HAT14
STRINGXP_010095880.11e-135(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-62homeobox from Arabidopsis thaliana