PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015873163.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

YABBY

Protein Properties

Length: 188aa MW: 20774.6 Da PI: 8.6951

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015873163.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	238	2.1e-73	6	161	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveee.nlksnvekeesastsvss 98 +se+vCyv+CnfCntilavsvP +slf++vtvrCGhC++llsvn+ + q+++ ++ + +++++++++ + k+ ++++++++ + XP_015873163.1 6 MASERVCYVHCNFCNTILAVSVPCSSLFTIVTVRCGHCANLLSVNMGASLQTIPPQDPTQL------QKQKQSTDDsSGKESGSSSKCNNKLSA- 93 689*************************************************9996222......222222222022222222222222222. PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 e+ ++e pr pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_015873163.1 94 ---IESVEHEQPRLPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 161 ...3456778899999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.2E-76	7	161	IPR006780	YABBY protein
SuperFamily	SSF47095	2.09E-8	106	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.0E-5	109	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSLEMMASER VCYVHCNFCN TILAVSVPCS SLFTIVTVRC GHCANLLSVN MGASLQTIPP 60 QDPTQLQKQK QSTDDSSGKE SGSSSKCNNK LSAIESVEHE QPRLPPIRPP EKRQRVPSAY 120 NRFIKEEIQR IKASNPDISH REAFSTAAKN WAHFPHIHFG LKLDGPNKQA KLDPAIAGDG 180 TQKPNGFY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015873163.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015873163.1	1e-140	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	6e-84	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	K9P2Z3	1e-105	K9P2Z3_9ROSI; YABBY2-like transcription factor YAB2
STRING	XP_006487832.1	1e-104	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-81	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]