PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873164.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family YABBY
Protein Properties Length: 186aa    MW: 20533.3 Da    PI: 8.6951
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873164.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY235.61.1e-7261595170
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                      +se+vCyv+CnfCntilavsvP +slf++vtvrCGhC++llsvn+  + q+++ ++        ++++++ +++++ k+  ++++++++  +  
  XP_015873164.1   6 MASERVCYVHCNFCNTILAVSVPCSSLFTIVTVRCGHCANLLSVNMGASLQTIPPQDP-------TQKQKQSTDDSSGKESGSSSKCNNKLSAI- 92 
                     689************************************************9999995.......33333333333333333344444333333. PP

           YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        e+ ++e pr pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  XP_015873164.1  93 ---ESVEHEQPRLPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 159
                     ...456778899999.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-757159IPR006780YABBY protein
SuperFamilySSF470951.96E-8104152IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.9E-5107153IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSLEMMASER VCYVHCNFCN TILAVSVPCS SLFTIVTVRC GHCANLLSVN MGASLQTIPP  60
QDPTQKQKQS TDDSSGKESG SSSKCNNKLS AIESVEHEQP RLPPIRPPEK RQRVPSAYNR  120
FIKEEIQRIK ASNPDISHRE AFSTAAKNWA HFPHIHFGLK LDGPNKQAKL DPAIAGDGTQ  180
KPNGFY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015873164.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873164.11e-139putative axial regulator YABBY 2 isoform X2
SwissprotQ9XFB09e-84YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLK9P2Z31e-106K9P2Z3_9ROSI; YABBY2-like transcription factor YAB2
STRINGEOY332261e-104(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.14e-81YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]