PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873165.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family YABBY
Protein Properties Length: 174aa    MW: 19192.7 Da    PI: 9.5128
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873165.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY193.97.2e-601114724170
           YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveee.nlksnvekeesastsvsseklsenedeevprvppvir 117
                     vsvP +slf++vtvrCGhC++llsvn+  + q+++ ++  +       +++++++++ + k+  ++++++++  +     e+ ++e pr pp ir
  XP_015873165.1  11 VSVPCSSLFTIVTVRCGHCANLLSVNMGASLQTIPPQDPTQL------QKQKQSTDDsSGKESGSSSKCNNKLSA----IESVEHEQPRLPP-IR 94 
                     9**********************************9996222......222222222022222222222222222....3456778899999.9* PP

           YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     PPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  XP_015873165.1  95 PPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 147
                     ***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.7E-6211147IPR006780YABBY protein
SuperFamilySSF470951.7E-892140IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.5E-595141IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MLSYLGLQPY VSVPCSSLFT IVTVRCGHCA NLLSVNMGAS LQTIPPQDPT QLQKQKQSTD  60
DSSGKESGSS SKCNNKLSAI ESVEHEQPRL PPIRPPEKRQ RVPSAYNRFI KEEIQRIKAS  120
NPDISHREAF STAAKNWAHF PHIHFGLKLD GPNKQAKLDP AIAGDGTQKP NGFY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015873165.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873165.11e-128putative axial regulator YABBY 2 isoform X3
SwissprotQ9XFB02e-70YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A2H5Q3I87e-89A0A2H5Q3I8_CITUN; Uncharacterized protein
STRINGXP_006487832.15e-89(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-67YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]