PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873368.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family LBD
Protein Properties Length: 295aa    MW: 32607.5 Da    PI: 9.0569
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.44.1e-3231122191
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                     aCaaC+++rrkC++dCv+ap fpa+++++f  vhk+FG+sn++k lk++++ee r+ a++s  +eA ++ +dP++G +gv+++l+++l++ +
  XP_015873368.1  31 ACAACRHQRRKCKPDCVMAPFFPADKMEEFLDVHKIFGVSNIVKCLKSIQTEEiRKLAADSFKWEASVWKQDPINGPLGVYNQLKSKLQHCR 122
                     7************************************************99999********************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.05330132IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-2931122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MVRKGDEEYN SKPRSSSNSS SSGSSSSTRH ACAACRHQRR KCKPDCVMAP FFPADKMEEF  60
LDVHKIFGVS NIVKCLKSIQ TEEIRKLAAD SFKWEASVWK QDPINGPLGV YNQLKSKLQH  120
CRSGACCCTC TCNPIQQQQP PSNHIMYNNG PPHHSTSSSS SSNIVNGYHQ QHHHNFSMPM  180
QTNNGYDAPP RPAVLYSHPI YHHHQQQSVR HLSLPAGCTT GGGGAITQRL VVERSSSGAM  240
EYQTFNNNNF FHGTSSTSNS ISGNIGAPIS QLMRQPKINN PPPPPPPHQF HPLPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-16321181297LOB family transfactor Ramosa2.1
5ly0_B2e-16321181297LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015873368.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873368.10.0protein ASYMMETRIC LEAVES 2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF147861315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-16LOB domain-containing protein 2