PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873627.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GeBP
Protein Properties Length: 239aa    MW: 27376.3 Da    PI: 10.5816
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873627.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57354.63e-1749137397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddid.afyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                     +qrl++eeDe  lLq +   +++    ps+ i+    + ++ks+ +++s++q+++K+rrL+ K++k+ ++     +  ++++hd++++++++kiW
  XP_015873627.1  49 PQRLFTEEDETHLLQIFYHITKSSP--PSSAINsPNLDRIEKSLGLRFSHTQIIDKLRRLRLKYHKQART-----KSLIKTHHDREVYKIARKIW 136
                     79*************8877755554..55544415789***************************99999.....67899*************** PP

          DUF573  97 g 97 
                     g
  XP_015873627.1 137 G 137
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.4E-1650137IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSTPINLRSS SKRNKPSSNS PTTTTNTKQP SSSSRSPPEQ FSGSQKIRPQ RLFTEEDETH  60
LLQIFYHITK SSPPSSAINS PNLDRIEKSL GLRFSHTQII DKLRRLRLKY HKQARTKSLI  120
KTHHDREVYK IARKIWGRKG SNSRGGKTEE EKEKEEEQRI GDVGLEEFPV LKHEAFGVLQ  180
GNVVWKKGLM GLEEKTLKGL NEKWMLLKME EAEVMATRAE LEKEVVELVV KAFLPSKSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015873627.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873627.11e-174probable transcription factor At1g61730
TrEMBLW9SBT17e-53W9SBT1_9ROSA; Uncharacterized protein
STRINGXP_010109922.11e-53(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1829633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.16e-11DNA-binding storekeeper protein-related transcriptional regulator