PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873856.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 339aa    MW: 38942.1 Da    PI: 6.4198
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.78.9e-1455130179
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 
                     +fY +YAke+GFsv +s++k+ k  +e+++++fvC ke  ++ ++++   ++r    tr +Ckakl v ++k+gk++++
  XP_015873856.1  55 EFYIKYAKEAGFSVHNSSTKRCKGANEVVRKEFVCFKEEVSSIKDDE---RKRCWGMTRENCKAKLAVVRSKTGKFVIS 130
                     6**************************************99998877...8889999*****************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1155130IPR004330FAR1 DNA binding domain
PfamPF105513.0E-31227320IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSVEQLEANS DCRRVENISL LSHSKSVDDV YIPQVAENYK PKVGQEFESI DGAHEFYIKY  60
AKEAGFSVHN SSTKRCKGAN EVVRKEFVCF KEEVSSIKDD ERKRCWGMTR ENCKAKLAVV  120
RSKTGKFVIS FSAANVPTHQ QISILEFEAG GIENIGCTTK DIYNHEAKVR NELKGQDAEL  180
LKEYFLTEQE KDSCFFFKID VDDDGKLKCC FWADSVSRRA YGCFGDVVVF DTTYNTNQYG  240
MIFAPLVGVN NHGQTVLFPC AFLSDEKRES FVWLFELLKD SMPTNNPKMI ITDQNPAMTK  300
AIVQSLPNTF HRYCSWHILE KFSTYLNAIT YREFYKDFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015873856.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873856.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A067D5X91e-121A0A067D5X9_CITSI; Uncharacterized protein
STRINGXP_004297991.11e-118(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-51FAR1-related sequence 5