PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015874031.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 344aa MW: 38645.4 Da PI: 7.2852

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015874031.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.3	1.5e-32	101	154	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+aveqLGG+e+AtPk +l+lmkv gL+++hvkSHLQ+YR+ XP_015874031.1 101 PRLRWTPDLHRSFVHAVEQLGGQERATPKLVLQLMKVRGLSIAHVKSHLQMYRS 154 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-31	97	155	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.016	97	157	IPR017930	Myb domain
SuperFamily	SSF46689	5.91E-15	99	155	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-23	101	156	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-8	102	153	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MKDRRLEIGV QGKIERSEEE AENTSSSAVL LSSRKCSSFD LNEAAVGEND IIMTMEEDDV 60 KTAEEDSSLS ANYNSSATSS TSAEDEEPKP KVREYVRSKM PRLRWTPDLH RSFVHAVEQL 120 GGQERATPKL VLQLMKVRGL SIAHVKSHLQ MYRSKKIDEA GQALQSYGSI GHGRNPCNER 180 YKTGSDRIEL SLVRGLFHCS SFSQPHLDFK ASTLRSIASD QIQVLGTNTV GNHVAIKRSQ 240 SLDQKCWPPQ VDEVILENDI KMRKFISNSQ SSFLISRYKQ EFEPLFPLQL NLEQVLKKEE 300 PIPKLRLGGL LSQKSSNVDD NNTHYRSSTT STQEISTNLS LSIS

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MKDRRLEIGV QGKIERSEEE AENTSSSAVL LSSRKCSSFD LNEAAVGEND IIMTMEEDDV  60
KTAEEDSSLS ANYNSSATSS TSAEDEEPKP KVREYVRSKM PRLRWTPDLH RSFVHAVEQL  120
GGQERATPKL VLQLMKVRGL SIAHVKSHLQ MYRSKKIDEA GQALQSYGSI GHGRNPCNER  180
YKTGSDRIEL SLVRGLFHCS SFSQPHLDFK ASTLRSIASD QIQVLGTNTV GNHVAIKRSQ  240
SLDQKCWPPQ VDEVILENDI KMRKFISNSQ SSFLISRYKQ EFEPLFPLQL NLEQVLKKEE  300
PIPKLRLGGL LSQKSSNVDD NNTHYRSSTT STQEISTNLS LSIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-19	102	156	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-19	102	156	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-19	102	156	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-19	102	156	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-19	102	156	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-19	102	156	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-19	102	156	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-19	102	156	4	58	Protein PHOSPHATE STARVATION RESPONSE 1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015874031.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015874031.1	0.0	uncharacterized protein LOC107411033
Refseq	XP_024932966.1	0.0	uncharacterized protein LOC107411033

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3012	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-38	G2-like family protein