PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015874094.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Dof

Protein Properties

Length: 356aa MW: 37858.2 Da PI: 10.1155

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015874094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	76	136	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nkks+ XP_015874094.1 76 PEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSK 136 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	63	129	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-32	79	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.469	80	134	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	82	118	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MVFSSIPVYL DPPNWHQQNH HRLGSGGNSS ETPQLPPLPP PPPPHVGVGG GSGGGIGSIR 60 PGSMADRARL AKLPQPEAAL KCPRCESTNT KFCYFNNYSL TQPRHFCKTC RRYWTRGGAL 120 RNVPVGGGCR RNKKSKSNNR SKSPVSTERP MGGSSSTNLM INPSGSDVVS RLLPPPQQNQ 180 SSSFMLSIQN HLSRFAGGGG GGGNLGLNFS EIQVPGDIGF PMGGNSGGNN VMLPGGEADQ 240 WRLQQFPPLM GNGFDSSSSS GLYPFQVGTE GVVEPVLPPM VGESQLIRNF SSSRVSQINN 300 NPPVKREDNH QGLNLSSSRP TLNAISENNN QFWGGSPWST DISGGLNSSS SSSHLL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MVFSSIPVYL DPPNWHQQNH HRLGSGGNSS ETPQLPPLPP PPPPHVGVGG GSGGGIGSIR  60
PGSMADRARL AKLPQPEAAL KCPRCESTNT KFCYFNNYSL TQPRHFCKTC RRYWTRGGAL  120
RNVPVGGGCR RNKKSKSNNR SKSPVSTERP MGGSSSTNLM INPSGSDVVS RLLPPPQQNQ  180
SSSFMLSIQN HLSRFAGGGG GGGNLGLNFS EIQVPGDIGF PMGGNSGGNN VMLPGGEADQ  240
WRLQQFPPLM GNGFDSSSSS GLYPFQVGTE GVVEPVLPPM VGESQLIRNF SSSRVSQINN  300
NPPVKREDNH QGLNLSSSRP TLNAISENNN QFWGGSPWST DISGGLNSSS SSSHLL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015874094.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015874093.1	0.0	dof zinc finger protein DOF2.4
TrEMBL	A0A067L763	9e-96	A0A067L763_JATCU; Uncharacterized protein
TrEMBL	A0A3Q8TN82	1e-95	A0A3Q8TN82_BOENI; Dof transcription factor 19
STRING	XP_004294531.1	4e-97	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-43	DNA binding with one finger 2.4