PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874262.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 238aa    MW: 27495.3 Da    PI: 10.1293
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874262.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.6e-17143225996
                     HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +v  + ++++p +f +eh     +++++++l++++g+sW v+l     +gr+ + +GW +F ++n+L+ gD ++F+l+gr+e   +v+ 
  XP_015874262.1 143 SVQGRYQVYIPSSFSKEHlPF--KKTVEVVLRNQKGESWVVTL--VVARGRHSICRGWLHFMNDNKLELGDRCIFELVGRKEM--KVHS 225
                     56667789**********633..36789***************..88999999************************997554..5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0035405364IPR000637HMG-I/HMG-Y, DNA-binding, conserved site
Gene3DG3DSA:2.40.330.109.8E-22132227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-22133227IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.493135229IPR003340B3 DNA binding domain
SMARTSM010198.5E-11139230IPR003340B3 DNA binding domain
PfamPF023622.4E-15143226IPR003340B3 DNA binding domain
CDDcd100176.38E-18143227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MCFSIQIFEM NGCERMNVRR TRTDHQSPPT SSKRPQDSTN VPHFKTHQNS ASTTVKRPRG  60
RPRKYPLPTA NHHLSKSCED DSGKSLISCH SNKPNGFIDG KGKEIKTEED DDHRVHDLSK  120
EDMAIDWKAA ESFRSKYPYF TCSVQGRYQV YIPSSFSKEH LPFKKTVEVV LRNQKGESWV  180
VTLVVARGRH SICRGWLHFM NDNKLELGDR CIFELVGRKE MKVHSIRTGP GRRNMFMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15563KRPRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874262.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874262.21e-180B3 domain-containing protein At5g18090-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.19e-11related to vernalization1 1