PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015874380.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 216aa MW: 23315.5 Da PI: 6.083

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015874380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.1	2.6e-42	50	149	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la XP_015874380.1 50 PCAACKILRRRCADKCVLAPYFPPTEPTKFTIAHRVFGASNIIKLLQELPESQRADAVTSMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLA 144 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_015874380.1 145 KAQAE 149 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.011	49	150	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-42	50	147	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MNMDYSSDAN TTTITNTSSL SPSSSSSPPP PPHPPPPSSP PSPPPVVVSP CAACKILRRR 60 CADKCVLAPY FPPTEPTKFT IAHRVFGASN IIKLLQELPE SQRADAVTSM VYEAGARIRD 120 PVYGCAGAIC QLQKQVNELQ AQLAKAQAEV VNMQCQHANL VALICMEMAQ SQQGLPQQTL 180 ADSFIATSPH SNQTNMGFLE DNNNNNIGPL WETLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-43	45	155	6	116	LOB family transfactor Ramosa2.1
5ly0_B	7e-43	45	155	6	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015874380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015874380.1	1e-159	LOB domain-containing protein 11-like
Swissprot	Q9SK08	3e-75	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A251NML0	5e-95	A0A251NML0_PRUPE; Uncharacterized protein
TrEMBL	M5W070	4e-95	M5W070_PRUPE; Uncharacterized protein
STRING	XP_008224697.1	1e-97	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-67	LOB domain-containing protein 11