PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015874524.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

TCP

Protein Properties

Length: 195aa MW: 21239 Da PI: 8.7617

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015874524.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.1	1.6e-34	38	110	7	66
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............s 66 ++++h+kv+gRdRR+Rl+a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++t++ s XP_015874524.1 38 HTKDRHAKVNGRDRRIRLPALCAARIFQLTRELGHKTDGQTIEWLLQQAEPSIIAATRNsystttastaptiS 110 69*********************************************************66554444443330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.3E-30	38	105	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.582	39	93	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MRLENMNLDI SLLSSKEKPP KPHISQNPSN TKNLPCKHTK DRHAKVNGRD RRIRLPALCA 60 ARIFQLTREL GHKTDGQTIE WLLQQAEPSI IAATRNSYST TTASTAPTIS DPGPPLPPPT 120 AGSTDYCGSL SSCQGKSSTT STSGGCESKE FVKRFGVSRG ESGLPPFDFD LLTNFDMEFS 180 ANEIAMLRAV TETSK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015874524.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015868077.1	1e-143	transcription factor PCF1-like
Refseq	XP_015874524.1	1e-143	transcription factor PCF1-like
TrEMBL	A0A061H0A3	1e-55	A0A061H0A3_THECC; Transcription factor-like protein
STRING	EOY34434	2e-56	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	1e-28	TCP family protein