PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874747.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 119aa    MW: 13449.2 Da    PI: 8.3141
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.3e-0832481027
                    GGTS--TTTTT-SS-SSS CS
         zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                    +r G+C+yGd+C++ H++
  XP_015874747.1 32 LR-GFCQYGDSCRYVHPM 48
                    44.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004511.7E-5338IPR003604Zinc finger, U1-type
SuperFamilySSF576678.93E-12442No hitNo description
PfamPF062201.8E-10533IPR013085Zinc finger, U1-C type
PROSITE profilePS501718.838637IPR000690Zinc finger, C2H2-type matrin
PROSITE profilePS501039.8641749IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-53248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-43347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MPLGKYYCDY CDKYFQDTPS ARKRHLQGLQ HLRGFCQYGD SCRYVHPMNR MQNLNPQGIS  60
GFADSSQLST FQGNQLFGGS SVPGDMVRDR MGMSWGNLPP SLKPPPEGGY PMFPFVDWG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874747.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874747.12e-84zinc finger CCCH domain-containing protein 3
SwissprotQ0JP113e-30C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLM5WL089e-55M5WL08_PRUPE; Uncharacterized protein
STRINGXP_008246287.11e-56(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.13e-36C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]