PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874948.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 163aa    MW: 17952.7 Da    PI: 10.7746
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874948.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.73.8e-192457134
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                    C+ C+ttkTplWR gp g+ktLCnaCG+++rkk+
  XP_015874948.1 24 CTDCKTTKTPLWRGGPAGPKTLCNACGIRHRKKR 57
                    ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.8091854IPR000679Zinc finger, GATA-type
SMARTSM004012.8E-161870IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-122058No hitNo description
Gene3DG3DSA:3.30.50.105.0E-162258IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.5E-172457IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
CDDcd002024.83E-122458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGMMDLRKKK SLPEGMNESN EKCCTDCKTT KTPLWRGGPA GPKTLCNACG IRHRKKRIPV  60
VRLSNRTERK RERLTCSHGN TKTSSATTTT TTTPTISPTS SDENGGRDSS ESLKARIMAL  120
GMDVFLQSSS VVKKQRWQKR RKLGEEEQAA VSLMALSCGS VFA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874948.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874948.11e-116GATA transcription factor 16
TrEMBLA0A2I4GVT82e-57A0A2I4GVT8_JUGRE; GATA transcription factor 15-like isoform X2
STRINGEOY115972e-50(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-23GATA transcription factor 15