PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875075.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 368aa    MW: 41303.4 Da    PI: 6.8428
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875075.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
   XP_015875075.1 14 RGLWSPEEDEKLIRYITTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding49.11.3e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
   XP_015875075.1  67 KGSFSAQEERTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 110
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-27564IPR009057Homeodomain-like
PROSITE profilePS5129417.684961IPR017930Myb domain
SuperFamilySSF466891.65E-2912108IPR009057Homeodomain-like
SMARTSM007172.9E-131363IPR001005SANT/Myb domain
PfamPF002493.4E-161461IPR001005SANT/Myb domain
CDDcd001671.75E-111761No hitNo description
PROSITE profilePS5129425.18362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2565117IPR009057Homeodomain-like
SMARTSM007177.5E-1566114IPR001005SANT/Myb domain
PfamPF002492.3E-1467110IPR001005SANT/Myb domain
CDDcd001671.18E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGGHQCCSKQ QVKRGLWSPE EDEKLIRYIT THGHGSWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKKGSF SAQEERTIID VHRILGNKWA QIAKHLPGRT DNEVKNFWNS CIKKKLIAQG  120
IDPNTHNLLP SSKTKTIINN NNNNNTTIAC NFSHHHHHTL QKPPSSVFSS NSHDNGNVTS  180
QTSINMKMWV ETPPFLTTLP FPCHGDHLSP AIPDHQSLEE SSIISIHEYQ VPNMVCSSST  240
KTNNDILHEQ NPNALLLERS QASTGISIPI SSSSPLNPSE FEMNINEEHC IWDGSSFEPI  300
GSTQDEVLMQ QPRPEKINNI ELCSAGQNMM MNDSYESSNN DFGFVESALL PCGMYCHLSP  360
MDHPAWNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875075.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875075.10.0transcription factor MYB20-like
TrEMBLA0A2P5EFH91e-112A0A2P5EFH9_TREOI; MYB transcription factor
STRINGEMJ145771e-111(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-83myb domain protein 67