PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875330.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 292aa    MW: 33487.9 Da    PI: 9.742
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3383e-121811798
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE- CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfr 98
                    +lp kf++++g +   s   +l+ ++g++W++kl  r++ g+++l kGW +F     +  g f+vF+++g+   + +++v++f+
  XP_015875330.1  1 MLPPKFVQRYGRN--LSDFAILKVPNGNKWKIKL-QRRSNGEVWLHKGWADFSINYSMGHGTFLVFTYIGKpgVNSHFLVQIFS 81
                    69********977..7778999************.3555555***************************863444455666666 PP
2B353.93.3e-172102901095
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     + k + +++p++f+eeh +   + +++tle+++g++W+v l  + k+++ +   GW +F ++n+Lk+gD++vF+l++++ f ++v+
  XP_015875330.1 210 YIKAKYMYVPNTFIEEHLLH--GFIDVTLETPNGKTWNVVL--KPKPKARFCV-GWPKFQSDNNLKVGDVIVFELVNKNPFAFKVR 290
                     5667789**********666..6789***************..8888775555.*********************98898877666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100174.59E-15181No hitNo description
SMARTSM010190.0012183IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084183IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-15182IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-15283IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-9282IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-18195290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-18196289IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.07201292IPR003340B3 DNA binding domain
SMARTSM010193.5E-9202290IPR003340B3 DNA binding domain
PfamPF023625.2E-15207291IPR003340B3 DNA binding domain
CDDcd100177.88E-18216291No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MLPPKFVQRY GRNLSDFAIL KVPNGNKWKI KLQRRSNGEV WLHKGWADFS INYSMGHGTF  60
LVFTYIGKPG VNSHFLVQIF SKKAMEIDYH QSNLPHSSDA SSSEDVEEDD EEEESSESET  120
SVQISDDDDD FPTSPKRGKA VQHQKKTRRE TDQTRPRYAP NTKYSKSSTS QGRGQVFPNN  180
QLDKKVEAIR AKEAFKCKHP LFVVGVQQGY IKAKYMYVPN TFIEEHLLHG FIDVTLETPN  240
GKTWNVVLKP KPKARFCVGW PKFQSDNNLK VGDVIVFELV NKNPFAFKVR IN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875330.20.0B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-22B3 family protein