PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875387.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CPP
Protein Properties Length: 790aa    MW: 87512.4 Da    PI: 6.7079
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.81.4e-15506543340
             TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     +k+CnCk+skClk+YCeCfaag +C  +C+C dC N+ 
  XP_015875387.1 506 CKRCNCKRSKCLKLYCECFAAGLYCVGSCSCIDCLNNP 543
                     79**********************************86 PP
2TCR51.42.2e-16590629140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+gCnC+ks+ClkkYCeCf+ g+ Cs +C+C +CkN+ 
  XP_015875387.1 590 RHKRGCNCRKSSCLKKYCECFQGGVGCSVSCRCIGCKNTF 629
                     589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-15504545IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.143505630IPR005172CRC domain
PfamPF036382.1E-11507542IPR005172CRC domain
SMARTSM011142.2E-18590631IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.4E-12592628IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MDTPVKNQLS PATPFSSKFE DSPVFNFISN LSPIEPVKTR LNDHTFNSVN FSSPPSLFAS  60
PQISSFSETR FAIRRHHFSD PTKPDSSRSE NENNTSEGVS VAVQPSNLRT EQLGYISPGS  120
SAREVIDEPL TDNLELAIEL PSSFKYDSGS PSSSVLPCDA INTGSVSDTT NTQAQLVQSV  180
TVNSKERHIL FEREKYLRRI NWVEQNNEAA RHDWEKKISD TDNLFNFDSP VTGEQPEGQD  240
PRTVDTGSMS FISDVLEDDL NKFERPESTD PVGSCEHYVM GEPCKESKGT GDMKETDQTP  300
AVLSSTLMDK LVVNDSNDMV DDKRRKGIQS SCKPRPQLHR TIRRRCLDFE RAGSHEKKSS  360
CECSGSSAVA IQSNSKVASV QNKFVHSMGG SFRSSSKLPG VGLHLNSPAT PTEGKVVNNE  420
SWASESQRIS KRVSIRSCDS LIPRETSHDK FSPKRSLERD LVPYDNEGQA IEEAHQTSTY  480
VDEEFDSSSP QNKRRKSEHV VENLACKRCN CKRSKCLKLY CECFAAGLYC VGSCSCIDCL  540
NNPIHENTVL ETRRQIESRN PLAFAPKVIR STDAVAEFGD ETNKTPASAR HKRGCNCRKS  600
SCLKKYCECF QGGVGCSVSC RCIGCKNTFG RKDGDCLSGA EETEFKESKV ETLGEKNATD  660
VETVGEPDLL KTPSEIGRPL YQQPVTLRGK PSPSPQLFNR QNPEKSKVLC GQLKFETRFE  720
VIPEDEALEK MESISQETSG LKSGSPDSKR VSPPHGHGES GSSLNCWRGG RKLILRSIPP  780
FPNFNPPSHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1750762712120Protein lin-54 homolog
5fd3_B1e-1750762712120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875387.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875387.10.0protein tesmin/TSO1-like CXC 3 isoform X2
TrEMBLA0A2P5DKQ70.0A0A2P5DKQ7_PARAD; Lin-54-like protein
STRINGXP_010090260.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-101Tesmin/TSO1-like CXC domain-containing protein