PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875535.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family G2-like
Protein Properties Length: 463aa    MW: 51108.2 Da    PI: 4.9916
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.61.4e-33253307155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr+rWt+eLHe+Fveav++LGGse+AtPk il+lmkv+gLt++hvkSHLQkYR+
  XP_015875535.1 253 KPRMRWTQELHESFVEAVHKLGGSERATPKGILNLMKVEGLTIYHVKSHLQKYRT 307
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.496250310IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-31251309IPR009057Homeodomain-like
SuperFamilySSF466891.45E-17251307IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-25253307IPR006447Myb domain, plants
PfamPF002493.1E-10255306IPR001005SANT/Myb domain
PfamPF143793.4E-18338383IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MRPALFIQRS DANQLSNLVA SEAKSLSFPV LSTSSEDKFP KLPDAYQPCS QSELMPNPTS  60
RQASALSSSG GTCGHLFSSP SIFPNGSNVS SVFPYERRPQ NFSLISQSND GKALQSIHAS  120
HSEMLSTPLI NHTEENKDVT WCPDSIQDFL DFPEMASVQN GPIESSTGGV MTYGDHAEKT  180
DWPDWDQFPT DEVLDQYLAG FPDDVNTEDS KPKVLEQSSE TLIQQPQTDH HQPLQAAEIC  240
SVPDPSSTTP SNKPRMRWTQ ELHESFVEAV HKLGGSERAT PKGILNLMKV EGLTIYHVKS  300
HLQKYRTARY KPESSEGNSE KNTTLPEEMK SLDAKASMGI TEALRLQVEL QKRLHDQLEN  360
QRKLQLQIEE QGKTLQKMFE QHRNASSSTL DDTNASLSIN GKSETTEQDH SKTGNSTGSA  420
NTTQESSQEA SLKQKSLETE AGEKPDPRDS ETGSPATKRA RSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875535.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875534.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
RefseqXP_015875535.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
RefseqXP_024926226.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
TrEMBLW9RHI81e-161W9RHI8_9ROSA; Myb family transcription factor APL
STRINGXP_010102208.11e-161(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.11e-75G2-like family protein