PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875551.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 280aa    MW: 31740.7 Da    PI: 8.9443
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875551.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.63e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +++q+G ++W++ ++  g+ R++k+c++rw +yl
   XP_015875551.1 14 KGPWTPEEDRILISYIHQHGHHNWRALPKQAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding58.91.2e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e ++++++ lG++ W++Ia++++ gRt++++k++w+++l
   XP_015875551.1  67 RGNFTQEEEETIINLHRILGNR-WSAIAARLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.199961IPR017930Myb domain
SuperFamilySSF466891.37E-3010108IPR009057Homeodomain-like
SMARTSM007179.1E-151363IPR001005SANT/Myb domain
PfamPF002497.1E-171461IPR001005SANT/Myb domain
CDDcd001674.53E-121661No hitNo description
PROSITE profilePS5129427.2262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2865116IPR009057Homeodomain-like
SMARTSM007176.6E-1866114IPR001005SANT/Myb domain
PfamPF002496.0E-1767112IPR001005SANT/Myb domain
CDDcd001672.77E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRTPCCQKM GLKKGPWTPE EDRILISYIH QHGHHNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TQEEEETIIN LHRILGNRWS AIAARLPGRT DNEIKNFWNT HLKKKLHDQK  120
TNYPSPTSME TTNKHYYSSI GISKLPNTPL DTENQTTQSF KHMVQSQVEV SHPQAQPSSI  180
SAATEEMHTL VIKEEDHEGN NKNVVASSIS STSTKNNAGG KILLPKKAPT VLDGSTSLLL  240
DNFMNNNNSN NEDVEFWYNL FVKAGDNHQA CMEMHSSATP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875551.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875551.10.0transcription factor MYB13-like
SwissprotQ9LTC46e-74MYB15_ARATH; Transcription factor MYB15
TrEMBLW9RQQ52e-81W9RQQ5_9ROSA; Myb-related protein Myb4
STRINGXP_010102236.13e-82(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-76myb domain protein 15
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]