PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015875767.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 247aa MW: 28151.7 Da PI: 7.2832

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015875767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.5	1.7e-26	80	167	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++Y+ +vGF +r+++ ++sk +g+i+ rt+vC+keg+r++ + + +++ ++r+ tr+gCka+l ++k ++gkw vtk+ +eH+H+la XP_015875767.1 80 FYSAYGMRVGFVTRMNYLSRSKLDGTIIGRTLVCNKEGYRKSYRCD-KQSTKPRTPTRVGCKAMLSIRKLSTGKWIVTKFIKEHTHSLA 167 9***************************************9999.9************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-24	80	167	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MDSELGEDIH DGVLDNSTDI DHELGNDTVT VGSSSIEETS HVGQNEEMTQ KSSKEKSNVV 60 EGDEPYVGQE FDTEEAAHAF YSAYGMRVGF VTRMNYLSRS KLDGTIIGRT LVCNKEGYRK 120 SYRCDKQSTK PRTPTRVGCK AMLSIRKLST GKWIVTKFIK EHTHSLAARY SQNVLISHQV 180 PNETMKIQEL TQQLLLERKR SASFRKVIDL LFNHIEEHTQ DLSRKVQCMV DKVKQIESDG 240 KDYKNLR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015875767.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015875767.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2I4FBJ8	1e-120	A0A2I4FBJ8_JUGRE; protein FAR1-RELATED SEQUENCE 12-like
STRING	EOY09724	1e-109	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	8e-68	FAR1 family protein