PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015875815.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

TCP

Protein Properties

Length: 319aa MW: 33254.2 Da PI: 10.1045

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015875815.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128	9.5e-40	182	285	3	112
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG ++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s++ + XP_015875815.1 182 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGNKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAP-------P 269 5699****************************************************************9997777777777743333.......4 PP TCP 97 skksqksaasalnlak 112 sk++++s + +l+la+ XP_015875815.1 270 SKSAPHSFHGTLALAH 285 4444444444455544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-37	186	278	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.389	187	241	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MDLADLQTNN SNNNNNNKQS GNTNTPHHHH PHHHQQQKQS SSSSSQFVVP FDGRSSAGGG 60 PSSQGGPPFM GSISIQAGLT TTHHHAHAHP HAHAASSTPA TAPSSSSSSS SSSSSSSSSS 120 STSASTAPPH LVDASLAIAT RSDAHPSTRP APLLDSSKKN QQQQQQQLSI SPTGAAAASN 180 PPVKRSTKDR HTKVDGRGRR IRMPATCAAR VFQLTRELGN KSDGETIEWL LQQAEPAIIA 240 ATGTGTIPAN FSTLNISLRS SGSTLSAPPS KSAPHSFHGT LALAHHPHYD EGFAHAGLLG 300 FHQHQPPLMT ADQIAEALP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015875815.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015875815.1	0.0	transcription factor TCP8-like, partial
TrEMBL	A0A2I4FV69	1e-108	A0A2I4FV69_JUGRE; transcription factor TCP8-like
STRING	XP_008218751.1	1e-98	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-58	TCP family protein