PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875947.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 181aa    MW: 20494.5 Da    PI: 10.857
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875947.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.3e-18118154135
            GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+  nC t +Tp+WR+gp g+ktLCnaCG++yrk+++
  XP_015875947.1 118 CTnyNCATRTTPMWRKGPLGPKTLCNACGIKYRKQEE 154
                     55559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.102.0E-14114164IPR013088Zinc finger, NHR/GATA-type
SMARTSM004014.1E-13114165IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-13115160No hitNo description
PfamPF003201.1E-15118154IPR000679Zinc finger, GATA-type
CDDcd002022.09E-9122149No hitNo description
PROSITE profilePS5011411.912122177IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MHQPALAMDW CGKVLGVGGH HNVCSEPRRG INNTVQNSYW TLAMRSQTHL KLNSSNGLVG  60
DYTKSYKNAF PPPPKMNVDY ILLNPSARRS HRRPGGSMRR RSMRHQRHQV VEDPNKRCTN  120
YNCATRTTPM WRKGPLGPKT LCNACGIKYR KQEEKRKEKE EAKQAAKEAA EKAVAARAAN  180
I
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875947.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865753.21e-134GATA zinc finger domain-containing protein 12-like
RefseqXP_015875947.21e-134GATA zinc finger domain-containing protein 12-like
TrEMBLA0A2I4F0S28e-29A0A2I4F0S2_JUGRE; GATA transcription factor 29-like
STRINGXP_002528130.13e-23(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.19e-14GATA transcription factor 29