PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875986.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 465aa    MW: 53016.3 Da    PI: 5.7961
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875986.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.14.1e-22120216185
        trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                     +Wt++ v++Li+++  ++++   +            +kk++W+ vsk m+++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d
  XP_015875986.1 120 KWTDNVVRLLIAVVACVGDDGMLEGveglkrksrvlQKKGKWKTVSKIMMSKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPALMD 214
                     7**************555555522112333444566**********************************************6699999998888 PP

        trihelix  84 ql 85 
                     ++
  XP_015875986.1 215 SM 216
                     87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-19118243No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDTSGLGGAF LSGSNGGILD LESSIPRHQP TQLAHSSLAH QHHMNLMSSV ENDHPISLME  60
VKGSTVKGVP VFGKGKSIAP GNANSNYNMS EEDEPSYMED GNESIDGGKG KKGSPWQRMK  120
WTDNVVRLLI AVVACVGDDG MLEGVEGLKR KSRVLQKKGK WKTVSKIMMS KGCHVSPQQC  180
EDKFNDLNKR YKRLNDILGR GTSCRVVENP ALMDSMPHLS AKSKDDVRKI LSSKHLFYKE  240
MCAYHNGQRI PDCHDFDLQG YSLPLGRCSR DDNGSDEEEA EENHDSEDDD LDNEDDSNVD  300
KDGERMGEYG HRKRMSEEDG YFWPPSIPQD SFEVEMAGIF QDPTKSSWDR REWIKKQMLQ  360
LQEQKVSFQA QAFELEKQRS KWLRYCSKKD RELERLRLEN ERMKLENERK LFQLRQKELE  420
VEWRSEASIE RPSLGIDRPQ GRDQIDLVSC EGTLQNGELH RFSPG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875986.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024926158.10.0uncharacterized protein LOC107412683 isoform X1
RefseqXP_024926159.10.0uncharacterized protein LOC107412683 isoform X1
RefseqXP_024926160.10.0uncharacterized protein LOC107412683 isoform X1
RefseqXP_024926161.10.0uncharacterized protein LOC107412683 isoform X2
TrEMBLW9S6Z60.0W9S6Z6_9ROSA; Uncharacterized protein
STRINGXP_010102326.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-77sequence-specific DNA binding transcription factors