PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876005.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26479.3 Da    PI: 9.8331
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876005.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvt+skRrng++KKA+EL +LCda+v+++++sstgkl+e++s
  XP_015876005.1  9 KRIENTTNRQVTYSKRRNGLFKKANELTILCDAKVSILMLSSTGKLHEFIS 59
                    79***********************************************86 PP
2K-box96.25.2e-3271168198
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq+s+g++l+++++e++q++l+kLk+ +++L++++R+++G++L++Ls+keL  Leq++e+++k iR++K+++l +qie++ kk k+++++nk+L 
  XP_015876005.1  71 YQRSEGVDLWNSHYERMQENLKKLKEVNRSLRKQIRQRMGDCLNELSFKELLGLEQDMEEAVKVIRERKYKVLSNQIETTNKKLKQARQINKNLL 165
                     79999****************************************************************************************98 PP

           K-box  96 kkl 98 
                      ++
  XP_015876005.1 166 IEF 168
                     776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.735161IPR002100Transcription factor, MADS-box
CDDcd002658.07E-39280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-36395IPR002100Transcription factor, MADS-box
PfamPF003193.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-273859IPR002100Transcription factor, MADS-box
PfamPF014864.9E-2182167IPR002487Transcription factor, K-box
PROSITE profilePS5129715.82584174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MARGKIQIKR IENTTNRQVT YSKRRNGLFK KANELTILCD AKVSILMLSS TGKLHEFISP  60
STTTKQIYDQ YQRSEGVDLW NSHYERMQEN LKKLKEVNRS LRKQIRQRMG DCLNELSFKE  120
LLGLEQDMEE AVKVIRERKY KVLSNQIETT NKKLKQARQI NKNLLIEFDA REDDPHYGLV  180
DNRGDYESVI GYSTEIVPRM FALRLQPNQP NLHSGTGSDL IAYPLLE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876005.11e-168floral homeotic protein DEFICIENS-like
RefseqXP_015884917.11e-168floral homeotic protein DEFICIENS-like
SwissprotE0CPH41e-116AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBLA0A061FCW91e-118A0A061FCW9_THECC; Floral homeotic protein DEFICIENS isoform 1
STRINGEOY149061e-119(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]