PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015876733.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

ARR-B

Protein Properties

Length: 705aa MW: 77998.7 Da PI: 7.5508

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015876733.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	30.1	1.1e-09	339	398	2	52
G2-like 2 prlrWtpeLHerFveaveqLGGse........kAtPktilelmkvkgLtl.ehvkSHLQk 52 r++W+peLH +F av+ LG + +A Pk ilelm+ + +tl ++ kS Qk XP_015876733.1 339 SRVVWSPELHLKFTAAVSALGDKTvsslsfdpEARPKPILELMNSPNITLrQKYKSQVQK 398 79****************876533333333699************72568999998 PP
2	Response_reg	46.1	2.6e-16	27	133	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEE.EEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpii.vvtahgeeedalealka 92 +l+vd + + ++ l+++le+ + +v++++ ++ al +l+e++ + l++ +++p++d l++l + +++ +p+i v++++ + ++a +al XP_015876733.1 27 ILVVDNDTVSLMYLASMLEQYSF-KVTTTELASVALSILREQKeqYKLVIANMNLPDIDNLAFLHLLLKKD--IPVIqVMSSERNGNLAGKALAQ 118 89*******************.***********777777******************8877..5555267799999***** PP TESEEEESS--HHHH CS Response_reg 93 GakdflsKpfdpeel 107 Ga fl Kp+ e+l XP_015876733.1 119 GACYFLQKPICLEDL 133 *******998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	5.2E-21	23	148	No hit	No description
SuperFamily	SSF52172	4.13E-20	23	147	IPR011006	CheY-like superfamily
SMART	SM00448	4.8E-12	25	137	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	27.03	26	141	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	3.6E-13	27	133	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.42E-16	28	134	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.1E-11	336	398	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence Send to blast
MCLKMDGNGM NFSVTKIVPK AANGLHILVV DNDTVSLMYL ASMLEQYSFK VTTTELASVA 60 LSILREQKEQ YKLVIANMNL PDIDNLAFLH LLLKKDIPVI QVMSSERNGN LAGKALAQGA 120 CYFLQKPICL EDLKFVWQHM YRKIRKPMKE VCEANIENKM NHGNDSRGIK IKETDNVSRA 180 PEKGNMIKEP GGVSGRPRCQ GIIIKEVNHA TRPPNYEGGK EVGGVSGSAT VCNLDGIQNR 240 YMVTDPNGKK KQFEGHQVSL VNENHVKVVQ NSCTKGSITT EQKKQEGLKT RRQIDDEEQQ 300 QQGKRTKVNS EQKSSQSLKT NEEEGERKDD SSSSNEKRSR VVWSPELHLK FTAAVSALGD 360 KTVSSLSFDP EARPKPILEL MNSPNITLRQ KYKSQVQKIN ETSTTDFLPV SKSTSSYSKA 420 EFPSLLERPS ALASPLGQRS LSFGGRGSTQ FTAPKSLAQP GPSLSSVINN HRTSNLNSGQ 480 MDISRTLNLY PTNNNSNEVH IENHSMLQRS NQIRKTSSFN SNNFVNENMK EIQPYQIQGS 540 VSQVSETNLP NLSYVIPEAA SPCISADMSQ LLNVPPYVNH AQEFAPDLAA PFNSQNQNQL 600 SAGAMGRTDV LQSQPAQMTL GNATNIEKSP NDFFGGSQNV DPTPEQVAAS GSNQNQSLLD 660 YANLLKFLED DLEYNCLDSA PDIGDIDHYC KWLEQTLHGK SKDPQ

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence Send to blast

MCLKMDGNGM NFSVTKIVPK AANGLHILVV DNDTVSLMYL ASMLEQYSFK VTTTELASVA  60
LSILREQKEQ YKLVIANMNL PDIDNLAFLH LLLKKDIPVI QVMSSERNGN LAGKALAQGA  120
CYFLQKPICL EDLKFVWQHM YRKIRKPMKE VCEANIENKM NHGNDSRGIK IKETDNVSRA  180
PEKGNMIKEP GGVSGRPRCQ GIIIKEVNHA TRPPNYEGGK EVGGVSGSAT VCNLDGIQNR  240
YMVTDPNGKK KQFEGHQVSL VNENHVKVVQ NSCTKGSITT EQKKQEGLKT RRQIDDEEQQ  300
QQGKRTKVNS EQKSSQSLKT NEEEGERKDD SSSSNEKRSR VVWSPELHLK FTAAVSALGD  360
KTVSSLSFDP EARPKPILEL MNSPNITLRQ KYKSQVQKIN ETSTTDFLPV SKSTSSYSKA  420
EFPSLLERPS ALASPLGQRS LSFGGRGSTQ FTAPKSLAQP GPSLSSVINN HRTSNLNSGQ  480
MDISRTLNLY PTNNNSNEVH IENHSMLQRS NQIRKTSSFN SNNFVNENMK EIQPYQIQGS  540
VSQVSETNLP NLSYVIPEAA SPCISADMSQ LLNVPPYVNH AQEFAPDLAA PFNSQNQNQL  600
SAGAMGRTDV LQSQPAQMTL GNATNIEKSP NDFFGGSQNV DPTPEQVAAS GSNQNQSLLD  660
YANLLKFLED DLEYNCLDSA PDIGDIDHYC KWLEQTLHGK SKDPQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015876733.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015876733.1	0.0	two-component response regulator ARR18 isoform X4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68210.1	2e-26	pseudo-response regulator 6