PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876774.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26834.7 Da    PI: 7.8653
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876774.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF627e-201665150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k ien+  r +tfskRr gi KKA+EL +LC+a+v v++fs++gk + ++
  XP_015876774.1 16 KLIENEEDRLITFSKRRSGIYKKASELATLCGADVGVVVFSPSGKPFSFA 65
                    569*****************************************987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-30867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.595868IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-28996IPR002100Transcription factor, MADS-box
CDDcd002651.47E-33978No hitNo description
PRINTSPR004049.7E-201030IPR002100Transcription factor, MADS-box
PfamPF003192.2E-241864IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-203045IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-204566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDGGKQTRGR QKIEMKLIEN EEDRLITFSK RRSGIYKKAS ELATLCGADV GVVVFSPSGK  60
PFSFANPSME YITNRFFNRN PLQDTNETHH LMETHRRDRV EELNKKYNQL QTQLEAEKAK  120
GKELRRLSKA KDKDEKGWWE APVDELDIYG LKQLNKSLAE LHLDLTTHIS QRKSTTFGAS  180
SSTANHHHHH HHHHRGGALV GSDGGTNDDQ GCLNPGPFPN DATGSDNLSA NFWDYNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-139109294MEF2C
5f28_B2e-139109294MEF2C
5f28_C2e-139109294MEF2C
5f28_D2e-139109294MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876774.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876774.11e-179agamous-like MADS-box protein AGL62
TrEMBLA0A2N9J3R93e-70A0A2N9J3R9_FAGSY; Uncharacterized protein
STRINGEMJ158793e-65(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-42AGAMOUS-like 62