PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015876782.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

M-type_MADS

Protein Properties

Length: 213aa MW: 24101.9 Da PI: 8.7359

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015876782.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.8	3.4e-19	15	63	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien+ r +tfskRr gi KK +EL +LC+aev v+ifs++gk + + XP_015876782.1 15 KRIENEDDRLITFSKRRSGIYKKSSELVTLCGAEVGVVIFSPSGKPFSF 63 79******************************************97776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.2E-29	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.581	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.62E-27	8	87	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.29E-34	8	79	No hit	No description
PRINTS	PR00404	7.8E-20	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.7E-23	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.8E-20	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.8E-20	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MEGKQTKGRQ KIEMKRIENE DDRLITFSKR RSGIYKKSSE LVTLCGAEVG VVIFSPSGKP 60 FSFAHPSIES IANRFLNQNP PQTDNTHPLV EAHRRVRIDE LNQQHNDLHN QLEAEKERGK 120 ELQMLARARG NQQGWWETPL EELGFEELQN MHASLEELHR NICNHVKGRS RFPMSSSSFH 180 GGAGTSAQGS MNPFLANASA THPPGYGYGR QHF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	4e-15	8	92	1	86	Myocyte-specific enhancer factor 2A
3kov_B	4e-15	8	92	1	86	Myocyte-specific enhancer factor 2A
3kov_I	4e-15	8	92	1	86	Myocyte-specific enhancer factor 2A
3kov_J	4e-15	8	92	1	86	Myocyte-specific enhancer factor 2A
3p57_A	4e-15	8	92	1	86	Myocyte-specific enhancer factor 2A
3p57_B	4e-15	8	92	1	86	Myocyte-specific enhancer factor 2A
3p57_C	4e-15	8	92	1	86	Myocyte-specific enhancer factor 2A
3p57_D	4e-15	8	92	1	86	Myocyte-specific enhancer factor 2A
3p57_I	4e-15	8	92	1	86	Myocyte-specific enhancer factor 2A
3p57_J	4e-15	8	92	1	86	Myocyte-specific enhancer factor 2A
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015876782.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015876782.1	1e-159	agamous-like MADS-box protein AGL62
TrEMBL	A0A2N9J3R9	1e-103	A0A2N9J3R9_FAGSY; Uncharacterized protein
STRING	cassava4.1_025366m	4e-84	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	1e-46	AGAMOUS-like 57