PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876983.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 293aa    MW: 33758.5 Da    PI: 9.3156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.2e-061762151155
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     rR +++ +++  L++l+ +      +K + a++L++A  YIk Lq
  XP_015876983.1 176 RRTQKLSDKITALQKLVSPY-----GKTDTASVLQEASGYIKLLQ 215
                     8*****************99.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.423165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-9176222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-7176220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.45E-5176219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030042Biological Processactin filament depolymerization
GO:0005622Cellular Componentintracellular
GO:0003779Molecular Functionactin binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKNAILPPVS SHIYDFGNNE IQILPNWDIP MQFNSKIAFC MDSEVLDNDN QIRAEAYSFP  60
IQSSYTVTHQ PAGFPTTLHH DENISHQSMR LGKKILAPQF DTLEFFMQAI QNARKRPIEV  120
DELLPKNDIG ELIGNQSTDM SEWRKIKRNK TTNFEHQWQE GSTRIQQQRL LVPTVRRTQK  180
LSDKITALQK LVSPYGKTDT ASVLQEASGY IKLLQDQIRQ NLFRMLSSSY DSVRGLQPVQ  240
EKGKGRLDLR SRGLCLVPIS FTQKVTMEER VDHNHALSLS RKPVLDRNFY CLN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876983.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3818590.0KT381859.1 Ziziphus jujuba actin-depolymerizing factor 1 (ACT1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876983.10.0actin-depolymerizing factor 1-like isoform X4
TrEMBLA0A0U4JRK11e-134A0A0U4JRK1_ZIZJJ; Actin-depolymerizing factor 1
STRINGXP_008371277.18e-89(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.19e-21bHLH family protein