PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877330.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 422aa    MW: 45817.4 Da    PI: 6.0608
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-174893147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
   XP_015877330.1 48 KGPWSPEEDAVLSRLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 93
                     79******************************.***********985 PP
2Myb_DNA-binding56.18.3e-18100144147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ 
   XP_015877330.1 100 RKPFTDEEDRIIVTAHAVHGNR-WAAIARLLP-GRTDNAIKNHWNST 144
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.9274394IPR017930Myb domain
SuperFamilySSF466897.55E-3145141IPR009057Homeodomain-like
SMARTSM007174.0E-154796IPR001005SANT/Myb domain
PfamPF002491.3E-164893IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2649101IPR009057Homeodomain-like
CDDcd001671.67E-145092No hitNo description
PROSITE profilePS5129425.32295149IPR017930Myb domain
SMARTSM007172.1E-1799147IPR001005SANT/Myb domain
PfamPF002494.5E-15100144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-23102148IPR009057Homeodomain-like
CDDcd001674.29E-13102145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MTVPNDKALK NDDHHSGESE LGGGGDEAEL VGVGEGSSGG GVQSGRVKGP WSPEEDAVLS  60
RLVSKFGARN WSLIARGIPG RSGKSCRLRW CNQLDPCVKR KPFTDEEDRI IVTAHAVHGN  120
RWAAIARLLP GRTDNAIKNH WNSTLKRRYA DLGRFKSSPG DIVEDGSLDR TKASSEETLS  180
FGNINSLRTM EGRDISMDNR PVQYEEKAPA NEDYCVAEPH DHPHLVTEVK DCTIPCRPVA  240
RVSAFSVYNH PSGAVNAPAR TAPTNGPMLQ ASKLELGACK FLENVSGEPM VPLQCGFGCC  300
ADSTGRPSHR SLLGPEFVEY VEPPSFPSHE LISMATDLNN IAWIKSGLEN SDSRIPVNAG  360
NMEPFQGTAT TSSVGILEQN KKDDHMHMEE GQNKLMGMMA GVLSTQMPRQ TFVMPSEVEG  420
LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-41471486107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877330.10.0transcription factor MYB1-like
TrEMBLA0A2P5EPU60.0A0A2P5EPU6_TREOI; GAMYB transcription factor
STRINGXP_008233695.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-98myb domain protein 109