PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877400.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-X1
Protein Properties Length: 881aa    MW: 98163.1 Da    PI: 8.3186
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X126.21.7e-08246264119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C+++CH GpCppC+
  XP_015877400.1 246 CGIHRCSEICHDGPCPPCR 264
                     ******************6 PP
2zf-NF-X118.44.8e-06300319120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+H C k CH+G+C+pCp+
  XP_015877400.1 300 CGRHVCDKGCHRGDCGPCPL 319
                     ******************95 PP
3zf-NF-X1186.1e-06407426120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+H C++ C+ G+CppC++
  XP_015877400.1 407 CGRHACKRRCCDGDCPPCSE 426
                     ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359081147IPR019786Zinc finger, PHD-type, conserved site
CDDcd060084.81E-6182230No hitNo description
PfamPF014220.071194211IPR000967Zinc finger, NF-X1-type
SMARTSM004380.072194212IPR000967Zinc finger, NF-X1-type
CDDcd060081.70E-9236284No hitNo description
PfamPF014221.2E-6246264IPR000967Zinc finger, NF-X1-type
SMARTSM004388.4E-6246265IPR000967Zinc finger, NF-X1-type
CDDcd060081.52E-9290333No hitNo description
PfamPF014220.0066300318IPR000967Zinc finger, NF-X1-type
SMARTSM004388.0E-4300319IPR000967Zinc finger, NF-X1-type
CDDcd060081.53E-9344393No hitNo description
PfamPF014220.0051354373IPR000967Zinc finger, NF-X1-type
SMARTSM004380.062354374IPR000967Zinc finger, NF-X1-type
CDDcd060085.72E-8397445No hitNo description
PfamPF014228.5E-4407425IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0092407426IPR000967Zinc finger, NF-X1-type
CDDcd060085.46E-11424472No hitNo description
PfamPF014220.0072428452IPR000967Zinc finger, NF-X1-type
SMARTSM004380.015434453IPR000967Zinc finger, NF-X1-type
SMARTSM0043841497512IPR000967Zinc finger, NF-X1-type
PfamPF0142218501511IPR000967Zinc finger, NF-X1-type
PfamPF0142226520529IPR000967Zinc finger, NF-X1-type
SMARTSM00438220520565IPR000967Zinc finger, NF-X1-type
PfamPF014220.15602612IPR000967Zinc finger, NF-X1-type
SMARTSM0043859602635IPR000967Zinc finger, NF-X1-type
CDDcd060081.72E-4633672No hitNo description
SMARTSM004380.0044645663IPR000967Zinc finger, NF-X1-type
PfamPF014220.023647662IPR000967Zinc finger, NF-X1-type
SMARTSM004381.8708729IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MPPPTHHQHH HHHHVHPPLS DSDADSDPDQ SGSKPTTRHA DLSDSIFRSY FEFTGRSSTT  60
PADLSKIQAF LNSSSSGALS CLICLERIRL SDPTWSCGSL CFAVFHLFCI QSWARQASDL  120
AALRASTRLP ISANKATEVS VWNCPKCRVE YTQFQIPKSY MCFCGKLENP PSDDPWVLPH  180
SCGEVCNRPL KHGCGHHCLL LCHPGPCPSC PKLIKAHCFC GSVEDVRRCG FKSFSCNNIC  240
SKRLDCGIHR CSEICHDGPC PPCRVRGLYR CQCGKEEDEK ECCDRLNFRC DNPCEKKLGC  300
GRHVCDKGCH RGDCGPCPLQ GKRTCPCGKR VYEGMACDIA VPLCGATCDK MLNCGFHRCP  360
ERCHRGPCIE TCRIVVTKSC RCGSLKKEVS CYQDLSCERK CQILRDCGRH ACKRRCCDGD  420
CPPCSEICGR KLRCKNHKCP SPCHRGACAP CPVMVTISCA CGETHFEVPC GTEVDQKPPR  480
CPKPCPITPL CRHATNCKPH KCHYGACPPC RLVCEADYPC GHTCNLRCHG PKPPPKPEFT  540
LKPKKKKSVH QAECTPGTPC PPCPELVWRS CVGQHVGAER MMLCSNRSRF YCDNLCGNLL  600
SCGNHYCTKT CHALETKHST SFQEAGGEPC DKCHLPCEKE RMPVCPHPCP RLCHPGDCPP  660
CKVLVKRSCH CGTMVHVFEC IYYNSLSGKE QIAVRSCGGP CHRKLPNCSH LCPETCHPGE  720
CPSPEKCSKK VTVRCKCQTL KKEWLCHDVQ AAYRSAGCDP KEVLKSQFGL GLLPCNSDCK  780
SKVQVVDSEL HLRKCKAAEV KEPETAKHLP KRKRRKERVQ EAKQISTLQK VAAAVKKVLL  840
FIALVVALII ASYYGYKGLL WLSDWMNEAE EARQRRRYTR F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1810815KRKRRK
2811816RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877400.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2P5EM310.0A0A2P5EM31_TREOI; Zinc finger, NF-X1-type
STRINGXP_004308935.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors