PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877428.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family G2-like
Protein Properties Length: 376aa    MW: 42195.6 Da    PI: 8.6156
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877428.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like919.9e-2968121255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm++kgL+++hvk  LQ+YR+
  XP_015877428.1  68 PRLRWTPDLHLCFVHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKKALQMYRS 121
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-2664122IPR009057Homeodomain-like
PROSITE profilePS512949.8564124IPR017930Myb domain
SuperFamilySSF466897.17E-1265122IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-1868123IPR006447Myb domain, plants
PfamPF002491.4E-669120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MVRSDDSSEV SRPSPSNENE PEDDYDQQLD NDSQRLKNGG SSSNSTAEEN AKTGASGSVR  60
QYVRSKTPRL RWTPDLHLCF VHAVERLGGQ DRATPKLVLQ LMNIKGLSIA HVKKALQMYR  120
SKKIEDPNQV LSEQGFFMEG GDHHIYNFSQ LPMLQSFNQW PSNSALRYGD SYRRGHDHQI  180
YFPYSGRAAL GSSRHGLYGS AAERILRNNN IATSSSSNLS PLNNPSFNKI ATWRRNQAQD  240
EYLSFHRSWQ EPVRPNSSSM EANLHHQAIS LKNNGSITTN SRTIQEAGQN PLKRKSSESD  300
CDLDLNLSLK IRPKDDELVV DEKALEGHEE VLSSTLSLSL SSTSSLKLSR VKEKGGDDQD  360
RKQARRMATS TFDLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1569123458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1569123458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-1569123357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1569123357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1569123357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1569123357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1569123458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1569123458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1569123458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1569123458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1569123458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1569123458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877428.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877428.10.0putative Myb family transcription factor At1g14600
TrEMBLW9SFW51e-109W9SFW5_9ROSA; Putative Myb family transcription factor
STRINGXP_010105426.11e-110(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-52G2-like family protein