PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015877442.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 192aa MW: 21039.9 Da PI: 8.4615

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015877442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132	2.5e-41	17	116	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C ++C++apyf +++pkkfa vhk+FGasnv+k+l+++ ee+reda++sl+yeAear+rdPvyG++g i lq+++ +l+++la XP_015877442.1 17 SCAACKFLKRRCIPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILNEVAEEQREDAVNSLAYEAEARLRDPVYGCIGAIAMLQRKMVELQNDLA 111 6********************************************************************************************** PP DUF260 96 llkee 100 l++++ XP_015877442.1 112 LARAR 116 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.039	16	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-40	17	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MVDAMKGGGH RARSSTSCAA CKFLKRRCIP NCIFAPYFRS DEPKKFAKVH KVFGASNVSK 60 ILNEVAEEQR EDAVNSLAYE AEARLRDPVY GCIGAIAMLQ RKMVELQNDL ALARARLAAR 120 CATNISSFSS SSSSSSYTIF DDRLTGTSLS GMQSAAYNGF TDSLSCYSSS TNLTESIPHG 180 LMYDYSYVPY IL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-48	14	117	8	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-48	14	117	8	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015877442.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015877442.2	1e-141	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	2e-60	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	M5X1A8	2e-74	M5X1A8_PRUPE; Uncharacterized protein
STRING	EMJ19699	3e-75	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-55	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]