PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877684.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 264aa    MW: 30647.5 Da    PI: 6.722
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877684.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.67.8e-0790109626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+ ++  G+C+ G+ C FaHg
  XP_015877684.1  90 CPAYRT-GYCHKGELCEFAHG 109
                     666655.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.06184111IPR000571Zinc finger, CCCH-type
SMARTSM003560.001884110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-484112IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-490109IPR000571Zinc finger, CCCH-type
SMARTSM0035632119142IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MFNGANPAPG YYQYLTNQKQ QFSGIASEEH NDRCMDEAIY GSDEFRMYAY KIKRCPRARS  60
HDWTECPYAH KGEKAQRRDP RKYNYCAVVC PAYRTGYCHK GELCEFAHGV FEYWLHPARY  120
RTRACNAGML CQRKVCFFAH SPDQLRPEIK FKNYCRNHHM VVDGLSNQGI VVNRIPTMVM  180
TTMSSGAGAT SSHQQPQLPQ LQQEEMKIIR DDDDDDGDDS FDKFAEFLKT LKALKISEDD  240
EEEKKSETSD LELPHIKWIS ELVQ
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877684.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877684.10.0zinc finger CCCH domain-containing protein 54
SwissprotO650362e-74C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLW9SQQ12e-90W9SQQ1_9ROSA; Zinc finger CCCH domain-containing protein 54
STRINGXP_010109132.13e-91(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141721011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.17e-72C3H family protein