PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015877752.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 290aa MW: 32052.8 Da PI: 7.4349

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015877752.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.5	3.9e-42	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk++rrkC+++C++apyfp +qp+kf nvh+++Gasnv kll++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l XP_015877752.1 14 PCAACKFQRRKCTQECIFAPYFPPDQPQKFTNVHRVYGASNVAKLLNELNSVHREDAVTSLAYEAEARLRDPVYGCVGFISILQNRLRQVQSDLY 108 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++k+e XP_015877752.1 109 AAKKE 113 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.238	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-41	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MSLSSSSSSS SHSPCAACKF QRRKCTQECI FAPYFPPDQP QKFTNVHRVY GASNVAKLLN 60 ELNSVHREDA VTSLAYEAEA RLRDPVYGCV GFISILQNRL RQVQSDLYAA KKELAAYIGP 120 QAMMIQPQPQ HAAAADYNIN MNMSMPMPML GIPTGPSQGS GGGGDHLLIR DSHLQQQQMY 180 EAQPQQQQQQ ELVRYNSSSG GFDPVSTLGR GGGFNNHQMG GNGNTSAMNN MSPSLGLGIF 240 DQNVCQIHQP PAQYHHPIEY HQIQAQLLPY QQPQQLHHSH HKSVPDDSQR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-47	4	117	1	114	LOB family transfactor Ramosa2.1
5ly0_B	5e-47	4	117	1	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015877752.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015877752.1	0.0	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	5e-67	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A498IUH3	4e-88	A0A498IUH3_MALDO; Uncharacterized protein
STRING	XP_009362272.1	1e-94	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-62	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]