PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877971.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 241aa    MW: 28060 Da    PI: 9.5935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877971.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-1169120255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++   e+Er+RR+++ + +  Lr+llP  +    ++K+s +e    Av YIk+L+
  XP_015877971.1  69 KKLRREIERQRRQEMTTLYVSLRSLLPLeL---IKGKPSMSEHMNVAVAYIKHLE 120
                     566789**********************78...********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-1364139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.87467119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-969138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-969120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-573125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MFPLHQSNKS SLFISFTSNE QGIVSKDLVL DHGNSVDRSR NLSNHMGKIR PKKLNENPDH  60
HHDERNEKKK LRREIERQRR QEMTTLYVSL RSLLPLELIK GKPSMSEHMN VAVAYIKHLE  120
KKIQELSVKR NELKRQPNCN NEKSNCLLPV DYFTISSWSG MVEIMINSWL GESDDRLTLS  180
RVLEVILEQG LDVVSCISTS QANDKLVYTI QSEVRDFTRT DQTKLQQRLA EVNPSWRYIS  240
K
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877971.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877971.11e-179transcription factor bHLH120-like
TrEMBLA0A2P5D9K82e-62A0A2P5D9K8_PARAD; Basic helix-loop-helix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.11e-25bHLH family protein