PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877981.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 191aa    MW: 21285 Da    PI: 6.5241
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877981.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.68e-071667154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    ++++   +Er+RR+++    + Lr+ lP  +    ++K s a+   +Av++I+++
  XP_015877981.1 16 KKMMRRDNERQRRQQMALLNASLRSQLPLeS---IKGKRSVADHINEAVNHINNM 67
                    57778899*********************66...******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-91284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.5471567IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-51572No hitNo description
Gene3DG3DSA:4.10.280.104.0E-71884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSTSDNRTNS SDNDEKKMMR RDNERQRRQQ MALLNASLRS QLPLESIKGK RSVADHINEA  60
VNHINNMKNK IEQLTVEKDK IESSLNISTN SPKSETSSDN KQSNSVVIRP CWGGMEIVIS  120
GGLSGEDLPL SSVLEVLVLE EGLNVVRCAS TKANGRLIHT IQAEVDDINR VDLSELQQKL  180
KVSIYDSLMG H
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877981.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877981.11e-136transcription factor bHLH36-like
TrEMBLW9S1D98e-55W9S1D9_9ROSA; Uncharacterized protein
STRINGXP_010109064.11e-55(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.12e-33bHLH family protein