PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877982.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 253aa    MW: 28200.2 Da    PI: 10.585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877982.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.35e-1281131355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++h  +Er RR+++ ++++ Lr+llP  +    ++K s ++   +Av+YIk Lq
  XP_015877982.1  81 MKHRDIERLRRQEMATRYASLRSLLPLeL---IKGKRSISDHIIEAVNYIKLLQ 131
                     68*************************78...*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.87E-878135No hitNo description
PROSITE profilePS5088812.91378130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-1278146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-981131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-982147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSSPLHQSNE LVFQISPNPH KKHKISKDLI LGTTPASLDF AVFDDKKKAN NDGWWRQRRK  60
PIAAASLENS TTSINNNKKM MKHRDIERLR RQEMATRYAS LRSLLPLELI KGKRSISDHI  120
IEAVNYIKLL QNKIKKLGSQ RDELKKLSNS ATISDHESRS SSTSPPAAAA ASRLSVQPFG  180
SGVEIIISSS TSSFPLSRVL DVLLQEGLSI VQCFSTTIND KLHHTIHSDR VNNVETINLP  240
SLEKKLTEAI SSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877982.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877982.10.0transcription factor bHLH118-like
TrEMBLA0A2P5D9K28e-70A0A2P5D9K2_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_008234326.16e-63(Prunus mume)
STRINGXP_010109067.11e-62(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.12e-34bHLH family protein